BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB020H09SP1|AL427686
(541 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1619 815 0.0
>3x_Contig1619
Length = 7770
Score = 815 bits (402), Expect = 0.0
Identities = 480/520 (92%), Gaps = 2/520 (0%)
Strand = Plus / Minus
Query: 1 gatctaaatttatcttccccccgcggcatcacccaaccctagggttgggtgagccgcggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2543 gatctaaatttatcttccccccgcggcatcacccaaccctagggttgggtgagccgcggg 2484
Query: 61 gggctaataataattgaccctctaatgttttatgtaaaccatgttttataatgataatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2483 gggctaataataattgaccctctaatgttttatgtaaaccatgttttataatgataatac 2424
Query: 121 waraaaatcnnnttacaaaatcaatanattttctagtatatwatccactatttaacatag 180
| |||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 2423 tagaaaatcacattacaaaatcaatatattttctagtatataatccactatttaacatag 2364
Query: 181 ttggaaatacttgataatataatctatcagtactagaaatttaaaatctatatttattat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2363 ttggaaatacttgataatataatctatcagtactagaaatttaaaatctatatttattac 2304
Query: 241 tatyttttcygcggactcctcccctttaaagggattaccaggggaggagccgcggggttt 300
||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2303 tatcttccccgcggactcctcccctttaaagggattaccaggggaggagccgcggggttt 2244
Query: 301 awaaatwtwatwagtagatttaggtaaatcatataatawactattatyaggwgttcaatt 360
| |||| | || |||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 2243 ataaattttattagtagatttaggtaaatcatataataaactattatcaggagttcaatt 2184
Query: 361 taaaadagtatcttgaatagccttcataaaawcttccccgcggtctccccccgaa--gag 418
||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||| |||
Sbjct: 2183 taaaatagtatcttgaatagccttcattaaatcttccccgcggtctccccccgaagggag 2124
Query: 419 gagccgcgggtgaatatatatgtdgagawacttcwaaactaatttaadagntantgntna 478
||||||||||||||| ||||||| |||| ||||| ||||| |||| | || || || | |
Sbjct: 2123 gagccgcgggtgaatttatatgttgagatacttctaaacttattttatagttattgttta 2064
Query: 479 aatttttagaaatagcnaaatgacccccagcatcgataaa 518
||||||||||||||| |||||||| |||| ||||||||
Sbjct: 2063 tatttttagaaatagctaaatgaccttcagcttcgataaa 2024
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.41 0.715 1.33
Gapped
Lambda K H
1.41 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2991
Number of Sequences: 1807
Number of extensions: 2991
Number of successful extensions: 103
Number of sequences better than 1.0e-20: 1
length of query: 541
length of database: 10,358,551
effective HSP length: 16
effective length of query: 525
effective length of database: 10,329,639
effective search space: 5423060475
effective search space used: 5423060475
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.4 bits)
S1: 12 (24.8 bits)
S2: 49 (99.8 bits)